These tables show the best and worst docking scores for each of the four proteins of interest. The most obvious pattern in this data is that ligands with a higher molecular weight tend to score better. This sort of data appears to be well suited to machine learning algorithms, i.e., programs may be able to learn from the features of chemical compounds and proteins and predict which ligands are likely score the best and bind the most strongly to a given protein.
| Scores and properties of best NPD ligands docked with FtsZ. | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Score | ZINC ID | MWT | LogP | Desolv apolar | Desolv polar | HBD | HBA | tPSA | charge | rb |
| -12.1 | ZINC04236084 | 504.543 | 0.92 | -3.58 | -23.14 | 1 | 10 | 108 | 0 | 2 |
| -11.9 | ZINC12879888 | 482.904 | 1.64 | 0.5555 | -67.28 | 7 | 10 | 169 | 1 | 4 |
| -11.6 | ZINC08764269 | 445.471 | 4.68 | 2.98 | -26.54 | 1 | 7 | 98 | 0 | 3 |
| -11.6 | ZINC12878248 | 491.524 | 3.14 | 5.45 | -61.79 | 5 | 10 | 152 | 1 | 6 |
| -11.5 | ZINC04236042 | 447.882 | 1.79 | -3.04 | -16.81 | 1 | 8 | 95 | 0 | 2 |
| -11.5 | ZINC04270603 | 484.536 | 3.94 | -1.93 | -56.66 | 2 | 9 | 97 | 1 | 6 |
| -11.5 | ZINC08789396 | 511.942 | 3.36 | -3.84 | -65.1 | 5 | 10 | 152 | 1 | 6 |
| -11.5 | ZINC04259821 | 449.447 | 1.84 | 4.34 | -62.57 | 2 | 11 | 130 | 1 | 6 |
| -11.5 | ZINC04259824 | 463.474 | 2.26 | 4.05 | -52.66 | 3 | 11 | 122 | 1 | 6 |
| -11.5 | ZINC12883374 | 477.544 | 3.94 | 10.27 | -61.65 | 4 | 7 | 99 | 1 | 3 |
| -11.5 | ZINC12897545 | 443.455 | 4.61 | 12.96 | -22.84 | 1 | 7 | 103 | 0 | 3 |
| -11.5 | ZINC12902067 | 493.543 | 3.44 | 7.38 | -65.63 | 5 | 8 | 119 | 1 | 3 |
| -11.6 | Averages | 474.69 | 2.96 | 2.97 | -48.56 | 3.08 | 9.00 | 120.33 | 0.67 | 4.17 |
| Scores and properties of worst NPD ligands docked with FtsZ. | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Score | ZINC ID | MWT | LogP | Desolv apolar | Desolv polar | HBD | HBA | tPSA | charge | rb |
| -3.6 | ZINC00167189 | 115.201 | 2.81 | -0.3 | -1.84 | 0 | 1 | 12 | 0 | 2 |
| -3.6 | ZINC01845901 | 129.228 | 3.55 | -0.66 | -1.54 | 0 | 1 | 12 | 0 | 4 |
| -3.6 | ZINC01846032 | 115.201 | 2.73 | -0.49 | -1.59 | 0 | 1 | 12 | 0 | 2 |
| -3.6 | ZINC03844512 | 135.599 | -2.34 | 0.43 | -27.96 | 0 | 2 | 16 | 1 | 0 |
| -3.6 | ZINC04701625 | 87.122 | 1.32 | -0.2 | -1.63 | 0 | 2 | 29 | 0 | 1 |
| -3.6 | ZINC04712486 | 88.106 | 0.12 | 2.19 | -5.32 | 0 | 2 | 18 | 0 | 2 |
| -3.6 | ZINC01594581 | 165.03 | 1.4 | 1.24 | -2.92 | 0 | 1 | 17 | 0 | 1 |
| -3.6 | ZINC04701702 | 82.106 | 0.54 | 1.55 | -5.8 | 1 | 2 | 28 | 0 | 0 |
| -3.5 | ZINC03852275 | 212.43 | 2.37 | 0.65 | -4.32 | 0 | 0 | 0 | 0 | 4 |
| -3.5 | ZINC03882605 | 115.201 | 2.81 | -0.3 | -1.86 | 0 | 1 | 12 | 0 | 2 |
| -3.4 | ZINC01698890 | 82.102 | 0.4 | 3.15 | -7.14 | 0 | 1 | 17 | 0 | 0 |
| -3.4 | ZINC13410577 | 88.106 | 0.12 | 0.8 | -3.3 | 0 | 2 | 18 | 0 | 2 |
| -3.3 | ZINC01841344 | 101.174 | 2.28 | -0.55 | -1.9 | 0 | 1 | 12 | 0 | 1 |
| -3.0 | ZINC01846561 | 134.25 | 1.6 | 0.33 | -10.94 | 0 | 0 | 0 | 0 | 0 |
| -3.0 | ZINC01736852 | 186.222 | 2.61 | 23.16 | -24.77 | 0 | 0 | 0 | 0 | 1 |
| Scores and properties of best NPD ligands docked with CoaD. | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Score | ZINC ID | MWT | LogP | Desolv apolar | Desolv polar | HBD | HBA | tPSA | charge | rb |
| -10.2 | ZINC03846570 | 406.398 | 2.54 | -7.67 | -25.96 | 3 | 9 | 114 | 0 | 2 |
| -10.2 | ZINC11990702 | 508.746 | 7.71 | 3.82 | -6.33 | 0 | 2 | 26 | 0 | 3 |
| -9.9 | ZINC08299195 | 499.639 | 3.2 | -1.62 | -56.27 | 3 | 8 | 98 | 1 | 6 |
| -9.8 | ZINC00626233 | 403.394 | 2.44 | -2.54 | -25.59 | 3 | 8 | 113 | 0 | 3 |
| -9.8 | ZINC02161153 | 425.509 | 1.55 | -5.74 | -47.06 | 5 | 8 | 126 | 1 | 4 |
| -9.8 | ZINC08790850 | 508.554 | 3.7 | -2.43 | -29.33 | 3 | 8 | 98 | 1 | 2 |
| -9.7 | ZINC04084160 | 399.494 | 3.53 | -0.01 | -9.54 | 1 | 5 | 56 | 0 | 2 |
| -9.7 | ZINC04265432 | 473.553 | 6.12 | -2.55 | -18.11 | 0 | 4 | 47 | 0 | 2 |
| -9.6 | ZINC04024540 | 392.502 | 6.76 | -0.38 | -9.28 | 0 | 3 | 32 | 0 | 2 |
| -9.6 | ZINC04046363 | 393.379 | 1.84 | -1.8 | -43.44 | 3 | 9 | 128 | 1 | 2 |
| -9.6 | ZINC04222852 | 475.501 | 3.45 | -4.64 | -24.51 | 3 | 9 | 114 | 0 | 6 |
| -9.6 | ZINC04265785 | 462.508 | 7.54 | 0.19 | -32.07 | 2 | 4 | 65 | 0 | 0 |
| -9.6 | ZINC02726701 | 453.539 | 2.86 | -2.59 | -57.76 | 3 | 8 | 123 | 0 | 4 |
| -9.6 | ZINC08789670 | 463.47 | 0.34 | -5.25 | -66.98 | 5 | 10 | 144 | 1 | 4 |
| -9.6 | ZINC09033658 | 494.527 | 3.3 | -2.46 | -31.8 | 3 | 8 | 98 | 1 | 2 |
| -9.6 | ZINC11990701 | 508.746 | 7.71 | 3.06 | -7.71 | 0 | 2 | 26 | 0 | 3 |
| -9.6 | ZINC02126798 | 447.515 | 3.92 | 6.75 | -53.24 | 5 | 8 | 117 | 1 | 3 |
| -9.6 | ZINC12885345 | 491.524 | 1.23 | 4 | -54.31 | 5 | 10 | 145 | 1 | 5 |
| Scores and properties of worst NPD ligands docked with CoaD. | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Score | ZINC ID | MWT | LogP | Desolv apolar | Desolv polar | HBD | HBA | tPSA | charge | rb |
| -3.4 | ZINC03843380 | 206.33 | -5.3 | 5.4 | -84.48 | 0 | 4 | 18 | 2 | 5 |
| -3.4 | ZINC00032315 | 204.366 | 3.36 | 1.96 | -5.82 | 0 | 0 | 0 | 0 | 0 |
| -3.4 | ZINC04712488 | 78.074 | 0.4 | 3.86 | -8.96 | 0 | 2 | 47 | 0 | 0 |
| -3.4 | ZINC01698890 | 82.102 | 0.4 | 3.15 | -7.14 | 0 | 1 | 17 | 0 | 0 |
| -3.4 | ZINC02168303 | 132.213 | 0.76 | 1.52 | -6.37 | 0 | 2 | 25 | 0 | 0 |
| -3.4 | ZINC00895439 | 154.256 | -0.33 | -5.66 | -4.87 | 2 | 2 | 40 | 0 | 3 |
| -3.4 | ZINC01763921 | 165.239 | 1.04 | 1.64 | -6.62 | 0 | 3 | 46 | 0 | 3 |
| -3.4 | ZINC03852211 | 154.256 | -0.33 | -5.4 | -4.94 | 2 | 2 | 40 | 0 | 3 |
| -3.3 | ZINC01845901 | 129.228 | 3.55 | -0.66 | -1.54 | 0 | 1 | 12 | 0 | 4 |
| -3.3 | ZINC04701625 | 87.122 | 1.32 | -0.2 | -1.63 | 0 | 2 | 29 | 0 | 1 |
| -3.2 | ZINC03844512 | 135.599 | -2.34 | 0.43 | -27.96 | 0 | 2 | 16 | 1 | 0 |
| -3.2 | ZINC03882605 | 115.201 | 2.81 | -0.3 | -1.86 | 0 | 1 | 12 | 0 | 2 |
| -3.1 | ZINC00167189 | 115.201 | 2.81 | -0.3 | -1.84 | 0 | 1 | 12 | 0 | 2 |
| -3.0 | ZINC01841344 | 101.174 | 2.28 | -0.55 | -1.9 | 0 | 1 | 12 | 0 | 1 |
| -2.9 | ZINC01736852 | 186.222 | 2.61 | 23.16 | -24.77 | 0 | 0 | 0 | 0 | 1 |
| -2.8 | ZINC03852275 | 212.43 | 2.37 | 0.65 | -4.32 | 0 | 0 | 0 | 0 | 4 |
| -2.8 | ZINC04712486 | 88.106 | 0.12 | 2.19 | -5.32 | 0 | 2 | 18 | 0 | 2 |
| -2.8 | ZINC13410577 | 88.106 | 0.12 | 0.8 | -3.3 | 0 | 2 | 18 | 0 | 2 |
| -2.7 | ZINC01846561 | 134.25 | 1.6 | 0.33 | -10.94 | 0 | 0 | 0 | 0 | 0 |
| Score | ZINC ID | MWT | LogP | Desolv apolar | Desolv polar | HBD | HBA | tPSA | charge | rb |
| -9.1 | ZINC08791231 | 478.552 | 4.49 | -0.83 | -18.27 | 2 | 7 | 85 | 0 | 4 |
| -9.0 | ZINC04235629 | 369.464 | 5.15 | -0.3 | -15.64 | 2 | 3 | 49 | 0 | 1 |
| -9.0 | ZINC04817561 | 522.645 | 6.76 | -0.49 | -13.4 | 0 | 6 | 66 | 0 | 2 |
| -9.0 | ZINC08790760 | 511.989 | 4.55 | -2.74 | -46.7 | 4 | 7 | 98 | 1 | 3 |
| -9.0 | ZINC12878012 | 497.962 | 4.19 | 9.69 | -45.86 | 4 | 7 | 99 | 1 | 3 |
| -9.0 | ZINC12883374 | 477.544 | 3.94 | 10.27 | -61.65 | 4 | 7 | 99 | 1 | 3 |
| -8.9 | ZINC08789997 | 497.962 | 4.17 | -3.04 | -61.56 | 4 | 7 | 98 | 1 | 3 |
| -8.9 | ZINC08790433 | 482.515 | 4.2 | -0.41 | -18.2 | 2 | 7 | 85 | 0 | 4 |
| -8.9 | ZINC08790759 | 511.989 | 4.55 | -2.64 | -61.09 | 4 | 7 | 98 | 1 | 3 |
| -8.9 | ZINC12885214 | 497.962 | 4.15 | 10.09 | -68.52 | 4 | 7 | 99 | 1 | 3 |
| -8.9 | ZINC12902067 | 493.543 | 3.44 | 7.38 | -65.63 | 5 | 8 | 119 | 1 | 3 |
| -8.8 | ZINC08297842 | 456.449 | 2.11 | -3.22 | -21.16 | 2 | 8 | 90 | 0 | 2 |
| -8.8 | ZINC02161108 | 472.609 | 4.88 | 11.07 | -35.98 | 3 | 6 | 83 | 1 | 3 |
| -8.8 | ZINC12894751 | 433.532 | 3.77 | 8.9 | -27.73 | 2 | 7 | 84 | 1 | 0 |
| -8.8 | ZINC12902062 | 493.543 | 3.44 | 6.95 | -46.08 | 5 | 8 | 119 | 1 | 3 |
| Scores and properties of worst NPD ligands docked with YwtF. | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Score | ZINC ID | MWT | LogP | Desolv apolar | Desolv polar | HBD | HBA | tPSA | charge | rb |
| -3.0 | ZINC01532620 | 103.121 | -1.1 | -2.48 | -66.33 | 3 | 3 | 67 | 0 | 3 |
| -3.0 | ZINC01788405 | 117.172 | -3.9 | 0.53 | -33.37 | 2 | 3 | 43 | 1 | 2 |
| -3.0 | ZINC01845901 | 129.228 | 3.55 | -0.66 | -1.54 | 0 | 1 | 12 | 0 | 4 |
| -3.0 | ZINC01846032 | 115.201 | 2.73 | -0.49 | -1.59 | 0 | 1 | 12 | 0 | 2 |
| -3.0 | ZINC03844512 | 135.599 | -2.34 | 0.43 | -27.96 | 0 | 2 | 16 | 1 | 0 |
| -3.0 | ZINC04701625 | 87.122 | 1.32 | -0.2 | -1.63 | 0 | 2 | 29 | 0 | 1 |
| -3.0 | ZINC04712488 | 78.074 | 0.4 | 3.86 | -8.96 | 0 | 2 | 47 | 0 | 0 |
| -3.0 | ZINC01594581 | 165.03 | 1.4 | 1.24 | -2.92 | 0 | 1 | 17 | 0 | 1 |
| -3.0 | ZINC04701702 | 82.106 | 0.54 | 1.55 | -5.8 | 1 | 2 | 28 | 0 | 0 |
| -2.9 | ZINC00167189 | 115.201 | 2.81 | -0.3 | -1.84 | 0 | 1 | 12 | 0 | 2 |
| -2.9 | ZINC03843381 | 206.33 | -5.3 | 5.95 | -89.67 | 0 | 4 | 18 | 2 | 5 |
| -2.9 | ZINC03843383 | 206.33 | -5.3 | 5.5 | -89.86 | 0 | 4 | 18 | 2 | 5 |
| -2.9 | ZINC03882605 | 115.201 | 2.81 | -0.3 | -1.86 | 0 | 1 | 12 | 0 | 2 |
| -2.9 | ZINC01728496 | 146.24 | 1.05 | 2.91 | -7.23 | 0 | 2 | 36 | 0 | 2 |
| -2.9 | ZINC01763921 | 165.239 | 1.04 | 1.64 | -6.62 | 0 | 3 | 46 | 0 | 3 |
| -2.7 | ZINC03852275 | 212.43 | 2.37 | 0.65 | -4.32 | 0 | 0 | 0 | 0 | 4 |
| -2.6 | ZINC01841344 | 101.174 | 2.28 | -0.55 | -1.9 | 0 | 1 | 12 | 0 | 1 |
| -2.6 | ZINC01846561 | 134.25 | 1.6 | 0.33 | -10.94 | 0 | 0 | 0 | 0 | 0 |
| -2.6 | ZINC13410577 | 88.106 | 0.12 | 0.8 | -3.3 | 0 | 2 | 18 | 0 | 2 |
| -2.5 | ZINC04712486 | 88.106 | 0.12 | 2.19 | -5.32 | 0 | 2 | 18 | 0 | 2 |
| -2.4 | ZINC01736852 | 186.222 | 2.61 | 23.16 | -24.77 | 0 | 0 | 0 | 0 | 1 |
| Scores and properties of best NPD ligands docked with RacE. | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Score | ZINC ID | MWT | LogP | Desolv apolar | Desolv polar | HBD | HBA | tPSA | charge | rb |
| -7.7 | ZINC03844349 | 407.43 | 0.3 | -12.97 | -149.76 | 8 | 9 | 146 | 2 | 3 |
| -7.7 | ZINC04015296 | 493.478 | 5.35 | -0.41 | -30.73 | 0 | 7 | 90 | 0 | 1 |
| -7.7 | ZINC04692014 | 464.379 | 0.35 | -13.03 | -21.58 | 8 | 12 | 210 | 0 | 3 |
| -7.6 | ZINC04349223 | 480.378 | -0.62 | -14.93 | -20.03 | 9 | 13 | 230 | 0 | 4 |
| -7.6 | ZINC04349341 | 464.379 | -0.36 | -14.93 | -21.97 | 8 | 12 | 210 | 0 | 4 |
| -7.6 | ZINC04349550 | 464.379 | 0.35 | -13.78 | -23.04 | 8 | 12 | 210 | 0 | 3 |
| -7.6 | ZINC08790691 | 477.497 | 2.18 | -5.6 | -40.78 | 5 | 10 | 144 | 1 | 4 |
| -7.6 | ZINC08876663 | 463.517 | 3.52 | -2 | -49.4 | 4 | 7 | 98 | 1 | 3 |
| -7.6 | ZINC12876895 | 449.443 | 1.3 | 3.15 | -47.68 | 5 | 10 | 145 | 1 | 3 |
| -7.6 | ZINC12881872 | 497.915 | 2.41 | 2.84 | -43.76 | 5 | 10 | 145 | 1 | 4 |
| -7.5 | ZINC03947432 | 448.38 | 0.19 | -12.35 | -20.07 | 7 | 11 | 190 | 0 | 4 |
| -7.5 | ZINC04349745 | 432.381 | 0.52 | -12.5 | -20.82 | 7 | 10 | 181 | 0 | 3 |
| -7.5 | ZINC02130311 | 462.526 | 2.61 | -6.23 | -46.17 | 5 | 8 | 123 | 1 | 3 |
| -7.5 | ZINC08627133 | 490.507 | 3.4 | -8.82 | -21.1 | 4 | 9 | 114 | 0 | 6 |
| -7.5 | ZINC08681631 | 480.378 | -0.62 | -15.55 | -18.6 | 9 | 13 | 230 | 0 | 4 |
| -7.5 | ZINC08789670 | 463.47 | 0.34 | -5.25 | -66.98 | 5 | 10 | 144 | 1 | 4 |
| -7.5 | ZINC08876671 | 464.498 | 1.08 | -7.03 | -57.49 | 5 | 9 | 132 | 1 | 4 |
| -7.5 | ZINC08876675 | 464.498 | 1.08 | -6.26 | -57.36 | 5 | 9 | 132 | 1 | 4 |
| -7.5 | ZINC12882459 | 476.553 | 3.11 | 4.76 | -46.33 | 5 | 8 | 124 | 1 | 3 |
| -7.5 | ZINC12883470 | 497.915 | 2.41 | 2.59 | -37.28 | 5 | 10 | 145 | 1 | 4 |
| -7.5 | ZINC13409398 | 420.812 | 3.06 | 3.35 | -19.89 | 3 | 8 | 121 | 0 | 1 |
| -7.5 | ZINC13409402 | 465.263 | 3.19 | 3.45 | -19.66 | 3 | 8 | 121 | 0 | 1 |
| -7.5 | ZINC13424725 | 464.379 | -0.36 | -9.4 | -17.73 | 8 | 12 | 211 | 0 | 4 |
| -7.5 | ZINC13424741 | 464.379 | -0.33 | -9.62 | -20.16 | 8 | 12 | 211 | 0 | 4 |
| Scores and properties of worst NPD ligands docked with RacE. | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Score | ZINC ID | MWT | LogP | Desolv apolar | Desolv polar | HBD | HBA | tPSA | charge | rb |
| -2.3 | ZINC00167189 | 115.201 | 2.81 | -0.3 | -1.84 | 0 | 1 | 12 | 0 | 2 |
| -2.3 | ZINC03844512 | 135.599 | -2.34 | 0.43 | -27.96 | 0 | 2 | 16 | 1 | 0 |
| -2.3 | ZINC03852275 | 212.43 | 2.37 | 0.65 | -4.32 | 0 | 0 | 0 | 0 | 4 |
| -2.3 | ZINC03882605 | 115.201 | 2.81 | -0.3 | -1.86 | 0 | 1 | 12 | 0 | 2 |
| -2.3 | ZINC04701625 | 87.122 | 1.32 | -0.2 | -1.63 | 0 | 2 | 29 | 0 | 1 |
| -2.3 | ZINC01594581 | 165.03 | 1.4 | 1.24 | -2.92 | 0 | 1 | 17 | 0 | 1 |
| -2.2 | ZINC01846032 | 115.201 | 2.73 | -0.49 | -1.59 | 0 | 1 | 12 | 0 | 2 |
| -2.2 | ZINC01698890 | 82.102 | 0.4 | 3.15 | -7.14 | 0 | 1 | 17 | 0 | 0 |
| -2.1 | ZINC01841344 | 101.174 | 2.28 | -0.55 | -1.9 | 0 | 1 | 12 | 0 | 1 |
| -2.1 | ZINC01736852 | 186.222 | 2.61 | 23.16 | -24.77 | 0 | 0 | 0 | 0 | 1 |
| -2.1 | ZINC13410577 | 88.106 | 0.12 | 0.8 | -3.3 | 0 | 2 | 18 | 0 | 2 |
| -2.0 | ZINC01846561 | 134.25 | 1.6 | 0.33 | -10.94 | 0 | 0 | 0 | 0 | 0 |
| -1.9 | ZINC04712486 | 88.106 | 0.12 | 2.19 | -5.32 | 0 | 2 | 18 | 0 | 2 |